The following table describes the pin-outs of the Zodiac FX JTAG header and the ATMEL-ICE debugger SAM connector. If using the 10 pin squid cable that comes with the full ATMEL-ICE kit then the wires can be connected to the pins as shown below.
Alternatively, a Zodiac FX Developer kit can be purchased from the Northbound Networks store which includes the debugger and a specifically designed cable.
NOTE: If using the Atmel ICE 10 pin squid cable then the pins highlighted in the table (7,9,10) are not required.